IL_6OXA_099

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CUAAGUG*CUUAAG

Length

13 nucleotides

Bulged bases

6OXA|1|RA|U|1142

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OXA_099 not in the Motif Atlas

Geometric match to IL_4WF9_039

Geometric discrepancy: 0.1353

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

6OXA|1|RA|C|1018
6OXA|1|RA|U|1019
6OXA|1|RA|A|1020
6OXA|1|RA|A|1021
6OXA|1|RA|G|1022
6OXA|1|RA|U|1023
6OXA|1|RA|G|1024
*
6OXA|1|RA|C|1140
6OXA|1|RA|U|1141
6OXA|1|RA|U|1142
6OXA|1|RA|A|1142|||A
6OXA|1|RA|A|1143
6OXA|1|RA|G|1144

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R9

50S ribosomal protein L36

Chain RH

50S ribosomal protein L6

Chain RN

50S ribosomal protein L13