IL_6OXA_120

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

AGAAG*UGGU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OXA_120 not in the Motif Atlas

Homologous match to IL_7RQB_060

Geometric discrepancy: 0.1665

The information below is about IL_7RQB_060

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_07235.1

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6OXA|1|RA|A|1469
6OXA|1|RA|G|1470
6OXA|1|RA|A|1471
6OXA|1|RA|A|1472
6OXA|1|RA|G|1473
*
6OXA|1|RA|U|1520
6OXA|1|RA|G|1521
6OXA|1|RA|G|1522
6OXA|1|RA|U|1523

Current chains

Chain RA

23S rRNA

Nearby chains