IL_6OXA_146

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

6OXA|1|RA|U|2167

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OXA|1|RA|G|2124
6OXA|1|RA|G|2125
6OXA|1|RA|A|2126
6OXA|1|RA|G|2127
*
6OXA|1|RA|C|2161
6OXA|1|RA|G|2162
6OXA|1|RA|C|2163
6OXA|1|RA|C|2164
6OXA|1|RA|G|2165
6OXA|1|RA|G|2166
6OXA|1|RA|U|2167
6OXA|1|RA|G|2168
6OXA|1|RA|A|2169
6OXA|1|RA|A|2170
6OXA|1|RA|A|2171
6OXA|1|RA|U|2172
6OXA|1|RA|A|2173
6OXA|1|RA|C|2174

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QW

Transfer RNA; tRNA