IL_6OXA_153

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

UGA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OXA_153 not in the Motif Atlas

Homologous match to IL_7A0S_085

Geometric discrepancy: 0.1409

The information below is about IL_7A0S_085

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.7

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

40

Unit IDs

6OXA|1|RA|U|2457
6OXA|1|RA|G|2458
6OXA|1|RA|A|2459
*
6OXA|1|RA|U|2493
6OXA|1|RA|G|2494

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QV

Transfer RNA; tRNA

Chain R0

50S ribosomal protein L27

Chain RQ

50S ribosomal protein L16

Chain ZB

CCPuro