IL_6OXA_158

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CG*CACG

Length

6 nucleotides

Bulged bases

6OXA|1|RA|A|2572, 6OXA|1|RA|C|2573

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OXA_158 not in the Motif Atlas

Geometric match to IL_7RQB_098

Geometric discrepancy: 0.1083

The information below is about IL_7RQB_098

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71530.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

6OXA|1|RA|C|2512
6OXA|1|RA|G|2513
*
6OXA|1|RA|C|2571
6OXA|1|RA|A|2572
6OXA|1|RA|C|2573
6OXA|1|RA|G|2574

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RE

50S ribosomal protein L3

Chain RN

50S ribosomal protein L13

Chain ZB

CCPuro