IL_6OXA_162

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OXA_162 not in the Motif Atlas

Geometric match to IL_4WF9_100

Geometric discrepancy: 0.1864

The information below is about IL_4WF9_100

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.5

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6OXA|1|RA|C|2652
6OXA|1|RA|U|2653
6OXA|1|RA|A|2654
6OXA|1|RA|G|2655
6OXA|1|RA|U|2656
6OXA|1|RA|A|2657
6OXA|1|RA|C|2658
*
6OXA|1|RA|G|2663
6OXA|1|RA|G|2664
6OXA|1|RA|A|2665
6OXA|1|RA|C|2666
6OXA|1|RA|C|2667
6OXA|1|RA|G|2668

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RH

50S ribosomal protein L6