IL_6OXA_188

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

UUC*GA

Length

5 nucleotides

Bulged bases

6OXA|1|XA|U|368

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OXA_188 not in the Motif Atlas

Homologous match to IL_4LFB_014

Geometric discrepancy: 0.085

The information below is about IL_4LFB_014

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

6OXA|1|XA|U|367
6OXA|1|XA|U|368
6OXA|1|XA|C|369
*
6OXA|1|XA|G|392
6OXA|1|XA|A|393

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XP

30S ribosomal protein S16