IL_6OXA_191

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OXA_191 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1117

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

6OXA|1|XA|G|409
6OXA|1|XA|G|410
6OXA|1|XA|A|411
6OXA|1|XA|A|412
6OXA|1|XA|G|413
6OXA|1|XA|A|414
6OXA|1|XA|A|415
6OXA|1|XA|G|416
*
6OXA|1|XA|U|427
6OXA|1|XA|G|428
6OXA|1|XA|U|429
6OXA|1|XA|A|430
6OXA|1|XA|A|431
6OXA|1|XA|A|432
6OXA|1|XA|C|433

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XD

30S ribosomal protein S4