IL_6OXA_205

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GAGUAG*CGCAGAUAC

Length

15 nucleotides

Bulged bases

6OXA|1|XA|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OXA_205 not in the Motif Atlas

Homologous match to IL_6CZR_143

Geometric discrepancy: 0.1157

The information below is about IL_6CZR_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37722.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

2

Unit IDs

6OXA|1|XA|G|683
6OXA|1|XA|A|684
6OXA|1|XA|G|685
6OXA|1|XA|U|686
6OXA|1|XA|A|687
6OXA|1|XA|G|688
*
6OXA|1|XA|C|699
6OXA|1|XA|G|700
6OXA|1|XA|C|701
6OXA|1|XA|A|702
6OXA|1|XA|G|703
6OXA|1|XA|A|704
6OXA|1|XA|U|705
6OXA|1|XA|A|706
6OXA|1|XA|C|707

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XK

30S ribosomal protein S11

Chain YA

Large subunit ribosomal RNA; LSU rRNA