IL_6OXA_209

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

6OXA|1|XA|A|1394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OXA_209 not in the Motif Atlas

Homologous match to IL_5J7L_039

Geometric discrepancy: 0.0703

The information below is about IL_5J7L_039

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

6OXA|1|XA|G|922
6OXA|1|XA|A|923
*
6OXA|1|XA|U|1393
6OXA|1|XA|A|1394
6OXA|1|XA|C|1395

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XE

30S ribosomal protein S5