IL_6OXA_228

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OXA_228 not in the Motif Atlas

Geometric match to IL_5VCI_002

Geometric discrepancy: 0.1158

The information below is about IL_5VCI_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6OXA|1|XA|G|1405
6OXA|1|XA|U|1406
6OXA|1|XA|C|1407
*
6OXA|1|XA|G|1494
6OXA|1|XA|U|1495
6OXA|1|XA|C|1496

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XV

Transfer RNA; tRNA

Chain XX

mRNA

Chain XY

Addiction module toxin, Txe/YoeB family

Chain YA

Large subunit ribosomal RNA; LSU rRNA