IL_6OXA_229

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

6OXA|1|XA|A|1492, 6OXA|1|XA|A|1493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OXA_229 not in the Motif Atlas

Geometric match to IL_5VCI_005

Geometric discrepancy: 0.2752

The information below is about IL_5VCI_005

Detailed Annotation

Not an internal loop

Broad Annotation

Not an internal loop

Motif group

IL_64417.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

18

Unit IDs

6OXA|1|XA|C|1407
6OXA|1|XA|A|1408
6OXA|1|XA|C|1409
*
6OXA|1|XA|G|1491
6OXA|1|XA|A|1492
6OXA|1|XA|A|1493
6OXA|1|XA|G|1494

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XL

30S ribosomal protein S12

Chain XX

mRNA

Chain XY

Addiction module toxin, Txe/YoeB family

Chain YA

Large subunit ribosomal RNA; LSU rRNA