IL_6OXA_235
3D structure
- PDB id
- 6OXA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- GUGGAUG*CUGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OXA_235 not in the Motif Atlas
- Geometric match to IL_7RQB_001
- Geometric discrepancy: 0.0859
- The information below is about IL_7RQB_001
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.6
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6OXA|1|YA|G|24
6OXA|1|YA|U|25
6OXA|1|YA|G|26
6OXA|1|YA|G|27
6OXA|1|YA|A|28
6OXA|1|YA|U|29
6OXA|1|YA|G|30
*
6OXA|1|YA|C|510
6OXA|1|YA|U|511
6OXA|1|YA|G|512
6OXA|1|YA|A|513
6OXA|1|YA|A|514
6OXA|1|YA|A|515
6OXA|1|YA|C|516
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain Y5
- 50S ribosomal protein L32
- Chain YU
- 50S ribosomal protein L20
- Chain YW
- 50S ribosomal protein L22
Coloring options: