IL_6OXA_240
3D structure
- PDB id
- 6OXA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- GGAACUG*CUCAGUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OXA_240 not in the Motif Atlas
- Homologous match to IL_7RQB_006
- Geometric discrepancy: 0.0561
- The information below is about IL_7RQB_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.7
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6OXA|1|YA|G|188
6OXA|1|YA|G|189
6OXA|1|YA|A|190
6OXA|1|YA|A|191
6OXA|1|YA|C|192
6OXA|1|YA|U|193
6OXA|1|YA|G|194
*
6OXA|1|YA|C|201
6OXA|1|YA|U|202
6OXA|1|YA|C|203
6OXA|1|YA|A|204
6OXA|1|YA|G|205
6OXA|1|YA|U|206
6OXA|1|YA|A|207
6OXA|1|YA|C|208
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain Y1
- 50S ribosomal protein L28
- Chain Y7
- 50S ribosomal protein L34
- Chain Y8
- 50S ribosomal protein L35
- Chain YP
- 50S ribosomal protein L15
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