IL_6OXA_241

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OXA_241 not in the Motif Atlas

Homologous match to IL_7RQB_007

Geometric discrepancy: 0.0692

The information below is about IL_7RQB_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6OXA|1|YA|U|239
6OXA|1|YA|G|240
6OXA|1|YA|A|241
6OXA|1|YA|G|242
6OXA|1|YA|U|243
6OXA|1|YA|A|244
6OXA|1|YA|G|245
*
6OXA|1|YA|C|253
6OXA|1|YA|G|254
6OXA|1|YA|A|255
6OXA|1|YA|A|256
6OXA|1|YA|A|257
6OXA|1|YA|G|258

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y8

50S ribosomal protein L35

Chain YP

50S ribosomal protein L15