IL_6OXA_272

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

6OXA|1|YA|U|1012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OXA_272 not in the Motif Atlas

Geometric match to IL_5TBW_050

Geometric discrepancy: 0.1926

The information below is about IL_5TBW_050

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6OXA|1|YA|G|1011
6OXA|1|YA|U|1012
6OXA|1|YA|C|1013
*
6OXA|1|YA|G|1149
6OXA|1|YA|C|1150

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YN

50S ribosomal protein L13

Chain YU

50S ribosomal protein L20