IL_6OXA_298

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GAGAAC*GAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OXA_298 not in the Motif Atlas

Homologous match to IL_7RQB_064

Geometric discrepancy: 0.0698

The information below is about IL_7RQB_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.2

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6OXA|1|YA|G|1651
6OXA|1|YA|A|1652
6OXA|1|YA|G|1653
6OXA|1|YA|A|1654
6OXA|1|YA|A|1655
6OXA|1|YA|C|1656
*
6OXA|1|YA|G|2004
6OXA|1|YA|A|2005
6OXA|1|YA|C|2006

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YE

50S ribosomal protein L3

Chain YR

50S ribosomal protein L17