IL_6OXA_302

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

6OXA|1|YA|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OXA_302 not in the Motif Atlas

Geometric match to IL_7RQB_068

Geometric discrepancy: 0.1285

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6OXA|1|YA|C|1686
6OXA|1|YA|G|1687
6OXA|1|YA|U|1688
6OXA|1|YA|A|1689
6OXA|1|YA|A|1690
6OXA|1|YA|C|1691
*
6OXA|1|YA|G|1696
6OXA|1|YA|G|1697
6OXA|1|YA|A|1698
6OXA|1|YA|G|1699
6OXA|1|YA|A|1700
6OXA|1|YA|A|1701
6OXA|1|YA|G|1702

Current chains

Chain YA

23S rRNA

Nearby chains

Chain XA

Small subunit ribosomal RNA; SSU rRNA

Chain YD

50S ribosomal protein L2