IL_6OXA_319

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

6OXA|1|YA|U|2113, 6OXA|1|YA|A|2119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OXA_319 not in the Motif Atlas

Geometric match to IL_1KXK_003

Geometric discrepancy: 0.3429

The information below is about IL_1KXK_003

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

6OXA|1|YA|G|2110
6OXA|1|YA|C|2111
6OXA|1|YA|G|2112
6OXA|1|YA|U|2113
6OXA|1|YA|A|2114
6OXA|1|YA|G|2115
6OXA|1|YA|G|2116
6OXA|1|YA|A|2117
6OXA|1|YA|U|2118
6OXA|1|YA|A|2119
6OXA|1|YA|G|2120
*
6OXA|1|YA|C|2178
6OXA|1|YA|C|2179

Current chains

Chain YA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain XW

Transfer RNA; tRNA