IL_6OXA_339

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CU*AUAAG

Length

7 nucleotides

Bulged bases

6OXA|1|YA|U|2712, 6OXA|1|YA|A|2712|||A, 6OXA|1|YA|A|2713

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OXA_339 not in the Motif Atlas

Homologous match to IL_7RQB_106

Geometric discrepancy: 0.0681

The information below is about IL_7RQB_106

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71530.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

6OXA|1|YA|C|2695
6OXA|1|YA|U|2696
*
6OXA|1|YA|A|2711
6OXA|1|YA|U|2712
6OXA|1|YA|A|2712|||A
6OXA|1|YA|A|2713
6OXA|1|YA|G|2714

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YR

50S ribosomal protein L17

Chain YT

50S ribosomal protein L19