IL_6OXI_031
3D structure
- PDB id
- 6OXI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (UAA)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.49 Å
Loop
- Sequence
- GAGUAG*CGCAGAUAC
- Length
- 15 nucleotides
- Bulged bases
- 6OXI|1|QA|A|702
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OXI_031 not in the Motif Atlas
- Homologous match to IL_6CZR_143
- Geometric discrepancy: 0.1925
- The information below is about IL_6CZR_143
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_37722.1
- Basepair signature
- cWW-L-tSH-L-tHW-tHS-R-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6OXI|1|QA|G|683
6OXI|1|QA|A|684
6OXI|1|QA|G|685
6OXI|1|QA|U|686
6OXI|1|QA|A|687
6OXI|1|QA|G|688
*
6OXI|1|QA|C|699
6OXI|1|QA|G|700
6OXI|1|QA|C|701
6OXI|1|QA|A|702
6OXI|1|QA|G|703
6OXI|1|QA|A|704
6OXI|1|QA|U|705
6OXI|1|QA|A|706
6OXI|1|QA|C|707
Current chains
- Chain QA
- 16S rRNA
Nearby chains
- Chain QK
- 30S ribosomal protein S11
- Chain RA
- Large subunit ribosomal RNA; LSU rRNA
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