IL_6OXI_040

3D structure

PDB id

6OXI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (UAA)

Experimental method

X-RAY DIFFRACTION

Resolution

3.49 Å

Loop

Sequence

CCC*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OXI_040 not in the Motif Atlas

Geometric match to IL_4WF9_007

Geometric discrepancy: 0.253

The information below is about IL_4WF9_007

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

6OXI|1|QA|C|1028
6OXI|1|QA|C|1028|||A
6OXI|1|QA|C|1028|||B
*
6OXI|1|QA|G|1032|||B
6OXI|1|QA|G|1033

Current chains

Chain QA

16S rRNA

Nearby chains

Chain YA

Large subunit ribosomal RNA; LSU rRNA