IL_6OXI_047

3D structure

PDB id

6OXI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (UAA)

Experimental method

X-RAY DIFFRACTION

Resolution

3.49 Å

Loop

Sequence

CUACAAAG*CAAAAAGG

Length

16 nucleotides

Bulged bases

6OXI|1|QA|A|1286

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OXI|1|QA|C|1246
6OXI|1|QA|U|1247
6OXI|1|QA|A|1248
6OXI|1|QA|C|1249
6OXI|1|QA|A|1250
6OXI|1|QA|A|1251
6OXI|1|QA|A|1252
6OXI|1|QA|G|1253
*
6OXI|1|QA|C|1284
6OXI|1|QA|A|1285
6OXI|1|QA|A|1286
6OXI|1|QA|A|1287
6OXI|1|QA|A|1288
6OXI|1|QA|A|1289
6OXI|1|QA|G|1290
6OXI|1|QA|G|1291

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QG

30S ribosomal protein S7

Chain QI

30S ribosomal protein S9

Chain QJ

30S ribosomal protein S10

Chain QN

30S ribosomal protein S14 type Z

Chain QU

30S ribosomal protein Thx