IL_6OXI_051

3D structure

PDB id

6OXI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (UAA)

Experimental method

X-RAY DIFFRACTION

Resolution

3.49 Å

Loop

Sequence

CGGAUUG*CAUGAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OXI|1|QA|C|1303
6OXI|1|QA|G|1304
6OXI|1|QA|G|1305
6OXI|1|QA|A|1306
6OXI|1|QA|U|1307
6OXI|1|QA|U|1308
6OXI|1|QA|G|1309
*
6OXI|1|QA|C|1328
6OXI|1|QA|A|1329
6OXI|1|QA|U|1330
6OXI|1|QA|G|1331
6OXI|1|QA|A|1332
6OXI|1|QA|A|1333
6OXI|1|QA|G|1334

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QM

30S ribosomal protein S13

Chain QU

30S ribosomal protein Thx

Chain R4

50S ribosomal protein L31