IL_6OXI_098

3D structure

PDB id

6OXI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (UAA)

Experimental method

X-RAY DIFFRACTION

Resolution

3.49 Å

Loop

Sequence

CCCCCAAG*CG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OXI_098 not in the Motif Atlas

Homologous match to IL_7RQB_037

Geometric discrepancy: 0.1187

The information below is about IL_7RQB_037

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_15861.7

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

6OXI|1|RA|C|1004
6OXI|1|RA|C|1005
6OXI|1|RA|C|1006
6OXI|1|RA|C|1007
6OXI|1|RA|C|1008
6OXI|1|RA|A|1009
6OXI|1|RA|A|1010
6OXI|1|RA|G|1011
*
6OXI|1|RA|C|1150
6OXI|1|RA|G|1151

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RN

50S ribosomal protein L13

Chain RU

50S ribosomal protein L20