IL_6OXI_120

3D structure

PDB id

6OXI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (UAA)

Experimental method

X-RAY DIFFRACTION

Resolution

3.49 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

6OXI|1|RA|A|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OXI_120 not in the Motif Atlas

Geometric match to IL_7A0S_016

Geometric discrepancy: 0.232

The information below is about IL_7A0S_016

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

6OXI|1|RA|C|1450
6OXI|1|RA|C|1451
*
6OXI|1|RA|G|1459
6OXI|1|RA|A|1460
6OXI|1|RA|G|1461

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RR

50S ribosomal protein L17