IL_6OXI_147

3D structure

PDB id

6OXI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (UAA)

Experimental method

X-RAY DIFFRACTION

Resolution

3.49 Å

Loop

Sequence

GGGAG*CGCCGGUGAAAUACC

Length

20 nucleotides

Bulged bases

6OXI|1|RA|G|2165, 6OXI|1|RA|U|2167, 6OXI|1|RA|A|2169, 6OXI|1|RA|A|2170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OXI|1|RA|G|2123
6OXI|1|RA|G|2124
6OXI|1|RA|G|2125
6OXI|1|RA|A|2126
6OXI|1|RA|G|2127
*
6OXI|1|RA|C|2161
6OXI|1|RA|G|2162
6OXI|1|RA|C|2163
6OXI|1|RA|C|2164
6OXI|1|RA|G|2165
6OXI|1|RA|G|2166
6OXI|1|RA|U|2167
6OXI|1|RA|G|2168
6OXI|1|RA|A|2169
6OXI|1|RA|A|2170
6OXI|1|RA|A|2171
6OXI|1|RA|U|2172
6OXI|1|RA|A|2173
6OXI|1|RA|C|2174
6OXI|1|RA|C|2175

Current chains

Chain RA

23S rRNA

Nearby chains