IL_6OXI_149

3D structure

PDB id

6OXI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (UAA)

Experimental method

X-RAY DIFFRACTION

Resolution

3.49 Å

Loop

Sequence

CC*GGG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OXI_149 not in the Motif Atlas

Geometric match to IL_7KGA_003

Geometric discrepancy: 0.217

The information below is about IL_7KGA_003

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

6OXI|1|RA|C|2137
6OXI|1|RA|C|2138
*
6OXI|1|RA|G|2153
6OXI|1|RA|G|2154
6OXI|1|RA|G|2155

Current chains

Chain RA

23S rRNA

Nearby chains