IL_6OXI_308
3D structure
- PDB id
- 6OXI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (UAA)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.49 Å
Loop
- Sequence
- UGCGAAC*GGAGGUAUA
- Length
- 16 nucleotides
- Bulged bases
- 6OXI|1|YA|G|1801, 6OXI|1|YA|G|1816, 6OXI|1|YA|U|1820
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OXI_308 not in the Motif Atlas
- Homologous match to IL_7RQB_070
- Geometric discrepancy: 0.0865
- The information below is about IL_7RQB_070
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_17069.3
- Basepair signature
- cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6OXI|1|YA|U|1798
6OXI|1|YA|G|1799
6OXI|1|YA|C|1800
6OXI|1|YA|G|1801
6OXI|1|YA|A|1802
6OXI|1|YA|A|1803
6OXI|1|YA|C|1804
*
6OXI|1|YA|G|1813
6OXI|1|YA|G|1814
6OXI|1|YA|A|1815
6OXI|1|YA|G|1816
6OXI|1|YA|G|1817
6OXI|1|YA|U|1818
6OXI|1|YA|A|1819
6OXI|1|YA|U|1820
6OXI|1|YA|A|1821
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain XA
- Small subunit ribosomal RNA; SSU rRNA
- Chain YD
- 50S ribosomal protein L2
Coloring options: