IL_6OXI_325
3D structure
- PDB id
- 6OXI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (UAA)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.49 Å
Loop
- Sequence
- CUGUGAAC*GGGAG
- Length
- 13 nucleotides
- Bulged bases
- 6OXI|1|YA|G|2133
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OXI_325 not in the Motif Atlas
- Homologous match to IL_5J7L_330
- Geometric discrepancy: 0.5177
- The information below is about IL_5J7L_330
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.9
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 27
Unit IDs
6OXI|1|YA|C|2129
6OXI|1|YA|U|2130
6OXI|1|YA|G|2131
6OXI|1|YA|U|2132
6OXI|1|YA|G|2133
6OXI|1|YA|A|2134
6OXI|1|YA|A|2135
6OXI|1|YA|C|2136
*
6OXI|1|YA|G|2155
6OXI|1|YA|G|2156
6OXI|1|YA|G|2157
6OXI|1|YA|A|2158
6OXI|1|YA|G|2159
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain QA
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: