IL_6OXI_361

3D structure

PDB id

6OXI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (UAA)

Experimental method

X-RAY DIFFRACTION

Resolution

3.49 Å

Loop

Sequence

GGG*CUAC

Length

7 nucleotides

Bulged bases

6OXI|1|RA|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OXI_361 not in the Motif Atlas

Geometric match to IL_5ML7_010

Geometric discrepancy: 0.341

The information below is about IL_5ML7_010

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

6OXI|1|RA|G|880
6OXI|1|RA|G|881
6OXI|1|RA|G|882
*
6OXI|1|RA|C|894
6OXI|1|RA|U|895
6OXI|1|RA|A|896
6OXI|1|RA|C|897

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RQ

50S ribosomal protein L16

Chain RZ

50S ribosomal protein L25