IL_6OXI_364

3D structure

PDB id

6OXI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (UAA)

Experimental method

X-RAY DIFFRACTION

Resolution

3.49 Å

Loop

Sequence

CCUAGUAC*GGACCGG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OXI_364 not in the Motif Atlas

Geometric match to IL_8OI5_139

Geometric discrepancy: 0.3671

The information below is about IL_8OI5_139

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.3

Basepair signature

cWW-cWW-tSH-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

6OXI|1|RA|C|2651
6OXI|1|RA|C|2652
6OXI|1|RA|U|2653
6OXI|1|RA|A|2654
6OXI|1|RA|G|2655
6OXI|1|RA|U|2656
6OXI|1|RA|A|2657
6OXI|1|RA|C|2658
*
6OXI|1|RA|G|2663
6OXI|1|RA|G|2664
6OXI|1|RA|A|2665
6OXI|1|RA|C|2666
6OXI|1|RA|C|2667
6OXI|1|RA|G|2668
6OXI|1|RA|G|2669

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RH

50S ribosomal protein L6