IL_6P4G_093

3D structure

PDB id

6P4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGACC*GGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P4G_093 not in the Motif Atlas

Geometric match to IL_8C3A_028

Geometric discrepancy: 0.3819

The information below is about IL_8C3A_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6P4G|1|2|C|188
6P4G|1|2|U|189
6P4G|1|2|G|190
6P4G|1|2|A|191
6P4G|1|2|C|192
6P4G|1|2|C|193
*
6P4G|1|2|G|206
6P4G|1|2|G|207
6P4G|1|2|G|208
6P4G|1|2|A|209
6P4G|1|2|U|210
6P4G|1|2|G|211

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

eS8