IL_6P4G_094

3D structure

PDB id

6P4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAC*GGCCC

Length

9 nucleotides

Bulged bases

6P4G|1|2|C|548

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P4G_094 not in the Motif Atlas

Geometric match to IL_5UNE_005

Geometric discrepancy: 0.3149

The information below is about IL_5UNE_005

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_76776.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

6P4G|1|2|G|534
6P4G|1|2|G|535
6P4G|1|2|A|536
6P4G|1|2|C|537
*
6P4G|1|2|G|546
6P4G|1|2|G|547
6P4G|1|2|C|548
6P4G|1|2|C|549
6P4G|1|2|C|550

Current chains

Chain 2

18S rRNA

Nearby chains

Chain f

eS30