IL_6P4G_095

3D structure

PDB id

6P4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GACC*GGCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P4G_095 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.2345

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6P4G|1|2|G|874
6P4G|1|2|A|875
6P4G|1|2|C|876
6P4G|1|2|C|877
*
6P4G|1|2|G|909
6P4G|1|2|G|910
6P4G|1|2|C|911
6P4G|1|2|C|912

Current chains

Chain 2

18S rRNA

Nearby chains

Chain I

eS7

Chain M

uS17