IL_6P4G_100

3D structure

PDB id

6P4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

6P4G|1|2|C|1331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P4G_100 not in the Motif Atlas

Geometric match to IL_4LFB_044

Geometric discrepancy: 0.1133

The information below is about IL_4LFB_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_82453.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

6P4G|1|2|U|1329
6P4G|1|2|G|1330
6P4G|1|2|C|1331
6P4G|1|2|A|1332
6P4G|1|2|U|1333
*
6P4G|1|2|A|1498
6P4G|1|2|U|1499
6P4G|1|2|G|1500

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 1

IAPV-IRES

Chain E

uS3

Chain L

eS10

Chain V

uS10

Chain e

eS29