IL_6P4G_102

3D structure

PDB id

6P4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AACUA*UUCUU

Length

10 nucleotides

Bulged bases

6P4G|1|2|C|1403, 6P4G|1|2|U|1404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P4G|1|2|A|1401
6P4G|1|2|A|1402
6P4G|1|2|C|1403
6P4G|1|2|U|1404
6P4G|1|2|A|1405
*
6P4G|1|2|U|1441
6P4G|1|2|U|1442
6P4G|1|2|C|1443
6P4G|1|2|U|1444
6P4G|1|2|U|1445

Current chains

Chain 2

18S rRNA

Nearby chains

Chain R

uS9

Chain V

uS10