IL_6P4H_015

3D structure

PDB id

6P4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GACUU*AUGCCGAC

Length

13 nucleotides

Bulged bases

6P4H|1|2|C|142, 6P4H|1|2|U|143

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P4H|1|2|G|130
6P4H|1|2|A|141
6P4H|1|2|C|142
6P4H|1|2|U|143
6P4H|1|2|U|144
*
6P4H|1|2|A|175
6P4H|1|2|U|176
6P4H|1|2|G|177
6P4H|1|2|C|178
6P4H|1|2|C|179
6P4H|1|2|G|180
6P4H|1|2|A|181
6P4H|1|2|C|182

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6