IL_6P4H_018

3D structure

PDB id

6P4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P4H_018 not in the Motif Atlas

Geometric match to IL_4WFL_001

Geometric discrepancy: 0.1511

The information below is about IL_4WFL_001

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6P4H|1|2|C|188
6P4H|1|2|U|189
6P4H|1|2|G|190
6P4H|1|2|A|191
6P4H|1|2|C|192
*
6P4H|1|2|G|207
6P4H|1|2|G|208
6P4H|1|2|A|209
6P4H|1|2|U|210
6P4H|1|2|G|211

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

eS8