IL_6P4H_054

3D structure

PDB id

6P4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGGUUC*GUU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P4H_054 not in the Motif Atlas

Homologous match to IL_4V88_435

Geometric discrepancy: 0.1339

The information below is about IL_4V88_435

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_22046.1

Basepair signature

cWW-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6P4H|1|2|A|1042
6P4H|1|2|G|1043
6P4H|1|2|G|1044
6P4H|1|2|U|1045
6P4H|1|2|U|1046
6P4H|1|2|C|1047
*
6P4H|1|2|G|1071
6P4H|1|2|U|1072
6P4H|1|2|U|1073

Current chains

Chain 2

18S rRNA

Nearby chains

Chain P

uS11

Chain b

eS26