IL_6P4H_055

3D structure

PDB id

6P4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P4H_055 not in the Motif Atlas

Geometric match to IL_5J7L_037

Geometric discrepancy: 0.1115

The information below is about IL_5J7L_037

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

6P4H|1|2|C|1047
6P4H|1|2|G|1048
6P4H|1|2|A|1049
6P4H|1|2|A|1050
6P4H|1|2|G|1051
*
6P4H|1|2|C|1067
6P4H|1|2|G|1068
6P4H|1|2|U|1069
6P4H|1|2|A|1070
6P4H|1|2|G|1071

Current chains

Chain 2

18S rRNA

Nearby chains

Chain P

uS11

Chain b

eS26