IL_6P4H_082

3D structure

PDB id

6P4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGGAUCG*CAUGAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P4H_082 not in the Motif Atlas

Homologous match to IL_8C3A_469

Geometric discrepancy: 0.0888

The information below is about IL_8C3A_469

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10092.1

Basepair signature

cWW-tSH-tSH-L-R-cWW-L-R-cWW

Number of instances in this motif group

1

Unit IDs

6P4H|1|2|G|1604
6P4H|1|2|G|1605
6P4H|1|2|G|1606
6P4H|1|2|A|1607
6P4H|1|2|U|1608
6P4H|1|2|C|1609
6P4H|1|2|G|1610
*
6P4H|1|2|C|1629
6P4H|1|2|A|1630
6P4H|1|2|U|1631
6P4H|1|2|G|1632
6P4H|1|2|A|1633
6P4H|1|2|A|1634
6P4H|1|2|C|1635

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

uS7

Chain T

uS13

Chain U

eS19