IL_6P4H_096

3D structure

PDB id

6P4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAUGGUUACCCAUC*GUAAGGCUUA

Length

24 nucleotides

Bulged bases

6P4H|1|1|U|6426, 6P4H|1|1|A|6431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P4H|1|1|U|6424
6P4H|1|1|A|6425
6P4H|1|1|U|6426
6P4H|1|1|G|6427
6P4H|1|1|G|6428
6P4H|1|1|U|6429
6P4H|1|1|U|6430
6P4H|1|1|A|6431
6P4H|1|1|C|6432
6P4H|1|1|C|6433
6P4H|1|1|C|6434
6P4H|1|1|A|6435
6P4H|1|1|U|6436
6P4H|1|1|C|6437
*
6P4H|1|1|G|6467
6P4H|1|1|U|6468
6P4H|1|1|A|6469
6P4H|1|1|A|6470
6P4H|1|1|G|6471
6P4H|1|1|G|6472
6P4H|1|1|C|6473
6P4H|1|1|U|6474
6P4H|1|1|U|6475
6P4H|1|1|A|6476

Current chains

Chain 1

IAPV-IRES

Nearby chains