IL_6P4H_102

3D structure

PDB id

6P4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAAAAAUU*ACCGCAGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P4H_102 not in the Motif Atlas

Homologous match to IL_8C3A_503

Geometric discrepancy: 0.4296

The information below is about IL_8C3A_503

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44416.1

Basepair signature

cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6P4H|1|2|G|807
6P4H|1|2|A|808
6P4H|1|2|A|809
6P4H|1|2|A|810
6P4H|1|2|A|811
6P4H|1|2|A|812
6P4H|1|2|A|813
6P4H|1|2|U|814
6P4H|1|2|U|815
*
6P4H|1|2|A|849
6P4H|1|2|C|850
6P4H|1|2|C|851
6P4H|1|2|G|852
6P4H|1|2|C|853
6P4H|1|2|A|854
6P4H|1|2|G|855
6P4H|1|2|C|856

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

eS4

Chain K

uS4

Chain M

uS17

Chain X

uS8