IL_6P5I_017

3D structure

PDB id

6P5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5I_017 not in the Motif Atlas

Geometric match to IL_4WFL_001

Geometric discrepancy: 0.2283

The information below is about IL_4WFL_001

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

6P5I|1|2|C|188
6P5I|1|2|U|189
6P5I|1|2|G|190
6P5I|1|2|A|191
6P5I|1|2|C|192
*
6P5I|1|2|G|207
6P5I|1|2|G|208
6P5I|1|2|A|209
6P5I|1|2|U|210
6P5I|1|2|G|211

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

eS8