IL_6P5I_080

3D structure

PDB id

6P5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGAUCG*CAUGAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5I_080 not in the Motif Atlas

Homologous match to IL_8C3A_469

Geometric discrepancy: 0.1847

The information below is about IL_8C3A_469

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10092.1

Basepair signature

cWW-tSH-tSH-L-R-cWW-L-R-cWW

Number of instances in this motif group

1

Unit IDs

6P5I|1|2|G|1604
6P5I|1|2|G|1605
6P5I|1|2|G|1606
6P5I|1|2|A|1607
6P5I|1|2|U|1608
6P5I|1|2|C|1609
6P5I|1|2|G|1610
*
6P5I|1|2|C|1629
6P5I|1|2|A|1630
6P5I|1|2|U|1631
6P5I|1|2|G|1632
6P5I|1|2|A|1633
6P5I|1|2|A|1634
6P5I|1|2|C|1635

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

uS7

Chain T

uS13

Chain U

eS19