IL_6P5I_101
3D structure
- PDB id
- 6P5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AU*AAAUGU
- Length
- 8 nucleotides
- Bulged bases
- 6P5I|1|5|U|150
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6P5I_101 not in the Motif Atlas
- Geometric match to IL_4V9F_009
- Geometric discrepancy: 0.1569
- The information below is about IL_4V9F_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_10396.1
- Basepair signature
- cWW-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
6P5I|1|5|A|121
6P5I|1|5|U|122
*
6P5I|1|5|A|147
6P5I|1|5|A|148
6P5I|1|5|A|149
6P5I|1|5|U|150
6P5I|1|5|G|151
6P5I|1|5|U|152
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AG
- eL8
- Chain AN
- eL15
- Chain Ah
- eL35
Coloring options: