IL_6P5I_127

3D structure

PDB id

6P5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCGGCGG*CACCCG

Length

13 nucleotides

Bulged bases

6P5I|1|5|G|739

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5I|1|5|C|737
6P5I|1|5|C|738
6P5I|1|5|G|739
6P5I|1|5|G|740
6P5I|1|5|C|741
6P5I|1|5|G|742
6P5I|1|5|G|743
*
6P5I|1|5|C|920
6P5I|1|5|A|921
6P5I|1|5|C|922
6P5I|1|5|C|923
6P5I|1|5|C|924
6P5I|1|5|G|925

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AM

L14e

Chain AS

eL20