IL_6P5I_131

3D structure

PDB id

6P5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUC*GCCCG

Length

8 nucleotides

Bulged bases

6P5I|1|5|C|1214, 6P5I|1|5|C|1215

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5I_131 not in the Motif Atlas

Geometric match to IL_4TS2_003

Geometric discrepancy: 0.3304

The information below is about IL_4TS2_003

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

6P5I|1|5|C|1082
6P5I|1|5|U|1083
6P5I|1|5|C|1084
*
6P5I|1|5|G|1213
6P5I|1|5|C|1214
6P5I|1|5|C|1215
6P5I|1|5|C|1216
6P5I|1|5|G|1217

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AF

uL30

Chain Ab

eL29