IL_6P5I_139

3D structure

PDB id

6P5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5I_139 not in the Motif Atlas

Geometric match to IL_4KZD_002

Geometric discrepancy: 0.2206

The information below is about IL_4KZD_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

6P5I|1|5|C|1431
6P5I|1|5|G|1432
6P5I|1|5|A|1433
6P5I|1|5|G|1434
*
6P5I|1|5|C|1450
6P5I|1|5|G|1451
6P5I|1|5|A|1452
6P5I|1|5|G|1453

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AC

uL4

Chain AQ

eL18